AT4G20700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.940 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1204) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: RNA binding;RNA-directed DNA polymerases (TAIR:AT4G20520.1); Has 137 Blast hits to 137 proteins in 35 species: Archae - 8; Bacteria - 23; Metazoa - 36; Fungi - 6; Plants - 62; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11098270..11100055 | ||||||||||||||||||||
| Molecular Weight (calculated) | 59479.60 Da | ||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||
| Length | 529 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSFLLHFSR LQYLGVAWPL WHRGTSSFSL LSCFDSLFLW FRCRWVRILL GSSPVGLILA PWAIRRLDRP SVKTTARRSS RGRSRQNLAT RWKMGRINLD 101: AIPNYSRKYK EKRAVSETPQ PSLSEGQQIA EATRRSLLDQ VGRRVFEPGC SNPTGMASEK TREEVEVVVP SEMRGDGQVA RRELVLGLQN SSGTFGARRV 201: APEVGRADAS KRPRVSDHRW GFRYDDMAAP FTSNSVACAE LLREIGRGSG IPSMPLDLKE EKVFAGAARK SIEVCSPSGF DSNFFFELHS LDTLFVQAIA 301: EWDRLTYLYE RCVRSLSVDA TNAKDAHEAL AVEKEKVAQA LADLARSQDD AKEMKRKYDE LAGRALSEMK RLRERRLEYA EFVRRSALDK MAELVQKRLD 401: RIKAHIDDTK AAEPKFLEFN QVSGNIKTLE ALVEGGEVEM KSDDMMLRLV ADAEELEAEV KAFGITDLMD GDFDVRTLFA ELSPDNRNSV PPPTEGEDLA 501: DGRGECEGQA GERIVGQTEV RDEIADARD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)