AT4G20620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein with domains of unknown function (DUF26 and DUF1204) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
Protein with domains of unknown function (DUF26 and DUF1204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902), Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF26 and DUF1204) (TAIR:AT4G20640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:11077958..11080306 | ||||||||||||||||||||
| Molecular Weight (calculated) | 54345.70 Da | ||||||||||||||||||||
| IEP (calculated) | 7.27 | ||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSVFGSVHI LAMIAIQLLL THSVSSLNLT NAYLHHKCSN TQGKYKQGSA FEKNLNLVLS TITSIGNFRD GFRYTEEGED PNNVFVMFQC RGDSYWSKCP 101: PCISTAVSGL RRRCPRNKGA IIWYDQCLLK ISSVASFNKI DYENDFYLSN PNNMSDRGLF NKETSALLEK LAYKASDRNN LDGKQLVLYA AGEKRIGTKK 201: VYAMVQCTKD LIFTKCFECL EGILRKFPQC CDGKRGGRVF GTSCNFRPCV ITKRRVAPEV FAGAARKSIE AIAEWDRLTY LYERCVRSLS VEATNAKDAH 301: EALAVEKEKV AQALADLARS QDDAKEMKRK YDELAGRALS EMKRLRERRL EYAEFVRRSA LDKMAELVQK RLDRIKAHID DTKAAEPKFL EFNQVSGNIK 401: TLEALVEEEL EAEVKAFGIT DLMDGDFDVR TLFAELSPDN RNSVPPPTEG EDLADGRGEC EGQAGERIVG QTEVRDEIAD ARD |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)