AT4G20520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding;RNA-directed DNA polymerases | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11045912..11047716 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42447.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||
| Length | 376 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVERLKPLMT NLIGPAQASF IPGRVSTDNI VFVQEAVHSM RRKKGVKGWM LLKLDLEKAY DRIRWDYLED TLISAGFPEV WLPEIARSTF GARRVAPEVG 101: RADASKRPRV SDHRWGFRYD DMAAPFTSNS VACAELLREI GRGSGIPSMP LDLKEEKVFA GAARKSIEAI AEWDRLTYLY ERCVRSLSVE ATNAKDAHEA 201: LAVEKEKVAQ ALADLARSQD DAKEMKRKYD ELAGRALSEM KRLRERRLEY AEFVRRSALD KMAELVQKRL DRIKAHIDDT KAAEPKFLEF NQMLRLVADA 301: EELEAEVKAF GITDLMDGDF DVRTLFAELS PDNRNSVPPP TEGEDLADGR GECEGQAGER IVGQTEVRDE IADARD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)