AT4G20200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20230.1); Has 1668 Blast hits to 1644 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 1662; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10908672..10911151 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70026.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEATSVFWPK LGSQIFLSSS TNLWPLSKLY GFHLTSFPSK PLKHIRLKAT NTLTFDDQER IRKFKKLPTS EWTHYGHSIS IDVSEMDALR KEIDALKPIL 101: KSTLMSFKGI DSTKKRILMI YLLVSLGLAY HFEEEIYETL KMSFENIDKM MDGEDDLYTV SIIFWVFRRH GYHISYGVFQ RFKGSNGNFK ESLTRDAKGM 201: LSLYEAANLG TTKDFILEEA LSFTSSHLES LAASGTCPPH LSVRIRNALG LSQHWNMEML VPVEFIPFYE QEIEHDEMLL KFAKLSFKLG QLQYLQELKT 301: LTKWYKELDF ATNLPPYFRD RIVEHHFLVQ AVFFSPQLSR ERIMMIQYFT GLALLDDTFD RYASLHEAES LANSLERWAP DQAMDKQPDY LRFVLNFILD 401: TFEEFKRELG PEERSYSVNA TIEEFKAAAK ANIDLEKWAQ ADHIPSFEEY MEVGEVEVTV YASLAGIFMS MGKMATKEAF EWLKSRPKLV QYLSIKGRLM 501: NDLMGYEDDM SRGYVTNAVN CYMKQYGVTK EEAFRELYKI VVAANKTLNE EFLSTTGVPH FLLKATIDLA RMMTVAYNVN EGFTNPQGKI KEYMTSMFVD 601: QIHI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)