AT4G20160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10890983..10894971 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 134517.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.94 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||
| Length | 1188 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSEVEMSS CQTFNCVLSR PHERCTQRDN NTNNNKKKNN NNNNVRNIHV AAFEKNLNVF VRDHLENCSV SVDDVVDDSI KAVPECSSNK SSVSDHRLSK 0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE 0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN 0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK 0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR 0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI 0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT 0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK 0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG 0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS 1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD 1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRYFCLIYR NFKSETLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)