AT4G20080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.551 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT3G57880.1); Has 1196 Blast hits to 1025 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 399; Fungi - 32; Plants - 689; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10865295..10867619 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87777.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.49 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||
| Length | 774 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVNGTGNGT GDGDFSLKET SPNIGNGGVN GGEKLTSSFD LVEAMHFLYA RIVRARALPV NDSFVAVKIG SYKGRTKQIL NSNPNPEFHE TFAFTKTRLQ 101: GDILEVVVRN RDNPNEDDIV GKCKFDVAEI PTRVPPDSPL APQWYRLEDR NGVKIGGEIM VSVWIGTQAD EVFSEAWHSD SASVTGENVV NTRSKVYLSP 201: RLWYLRVNVI EAQDLVLLHP NRINPEILIK GFLGNVVVRS RISQTKSVSP VWNEDMMFVA VEPFDDSLIL SVEDKVGPRE ECLGRCEIKL SQVERRVLPG 301: PVPSLWYNVE HIGETGEGRR FAGRIHLRVS LDGGYHVLDE SIQYSSDYRA SAKLLWTPPI GVLELGVLNA TGLMPMKSRG GRGTTDAYCV AKYGTKWVRT 401: RTIVDTFDPK WNEQYTWEVY DPYTVITIGV FDNLKLFGAG NENRLINDSR IGKIRIRLST LVTSKIYTHS YPLMVLKPDG VKKMGEIQLA VRFTATSMMD 501: MLQKYTEPLL PEMHYISPLS IYQLDSLRHQ ATHILCINLG RNEPALGRDV VEYMLDVGSN IWSLRRGRAN FERLVSFFDG WIDAWKWFDE ICKWKSPVTS 601: VLVHIVCLFV VFLPKYCVFS MLLYCFVFGL YRFGLRPRHP PHMDIKLSKA DSALPDELDE EFDVFPSSKS GDVLKRRYDR LRGIAGRMMI VLGDLATQGE 701: RVKSLLSWRD PRATSLFLTF CFVSCGVICF VSMKLLLTFL AFYVMRHPRV RVFDIPSIPQ NFFRRLPSRA DSIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)