AT4G20040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.871 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G20050.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10847348..10848963 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52352.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLYSFISLL LLFLITISME FKETSSLRRD MTKLLKLQEK IQERLAVTPT LSPVSSPSSH SPKMVGKVIY PIGYGADPTG GQDSSDAILE ALTDAFQLQT 101: GLEMLPRVAD LGGLVIDLQG GSYMIGKPLR FPSSGGGNLV VKGGTFRASE LFPGDRHLVE LVASNAKKPM KMSPEESFSD QKDQSSGIFY EDVTFQDVLF 201: DSRFRGGGIL VIDSARIRIT NCYFLHFTTQ GIKVQGGHET YISNSFLGQH STVGGDREER GFTGTGIDIS SNDNAITDVV IFSAGIGISL NGGANMVTGV 301: HCYNKATWFG GIGILVKSHL TRIDNCYLDY TGIVIEDPVH VHVTNALFLG DANIVLRSVH GKISGVNIVN NMFSGTAKNN FPIVKLEGEF HDINQVVIDQ 401: NNAEGMMLKS TTGKAMVSAN GTRWIADFSP VLVFPNRINH YQHSFFAQSG QIPANAVTNV SNNMVVVETD RAVTGTVSII AYQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)