AT4G19970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10818242..10825343 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82080.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 715 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSTNDESPS LGYDFAGVSI KDGKSKPPAP VICYDGLFGG RDVIRIVLLV TTVTLSCLLF YKSANNPLNM VFSPWKTDCY ASKLTNESSS KTEPKKEPVS 101: ELERVLMNAA MEDNTVIITA LNQAWAEPNS TFDVFRESFK VGIETERLLK HVIAVCLDIK AYDQCLKVHP HCYLINATDS DQLSGPNRFM TPGYLKLIWR 201: RMDLLRQVIG LGYNFIFTDA DILWLRDPFP RFFPDADFQI TCDDYNGRPS DKKNHVNSGF TYVKANNKTS KFYKYWIRSS RKFPGKHDQD VFNFIKNDLH 301: VEKLGIKMRF FDTVYFGGFC QPSRDINVVN TMHANCCIGL DNKVNNLKAA LEDWKRYVSL NTTVSETKWN IPPSFLDYGS AIGQKEVKKI LVLVLGLAAC 401: LLLYKTAYPL HQELDVNNLS SRPLLDHTSS SSPLTRSKSI SFREVLENAS TENRTVIVTT LNQAWAEPNS LFDLFLESFR IGQGTKKLLQ HVVVVCLDSK 501: AFARCSQLHP NCYYLKTTGT DFSGEKLFAT PDYLKMMWRR IELLTQVLEM GYNFIFTDAD IMWLRDPFPR LYPDGDFQMA CDRFFGDPHD SDNWVNGGFT 601: YVKSNHRSIE FYKFWYNSRL DYPKMHDQDV FNQIKHKALV SEIGIQMRFF DTVYFGGFCQ TSRDINLVCT MHANCCVGLA KKLHDLNLVL DDWRNYLSLS 701: EPVKNTTWSV PMKCT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)