AT4G19920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT4G19925.1); Has 5220 Blast hits to 2823 proteins in 288 species: Archae - 6; Bacteria - 484; Metazoa - 487; Fungi - 162; Plants - 3006; Viruses - 566; Other Eukaryotes - 509 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10797392..10798360 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31391.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.14 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
| Length | 274 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPPSPPPPP IPESRPRPLT PPVLLTRPRP PLPYARPLQP PQSLPPRPRP QVFVSFRGKE LRHGFVSHVV KALRIAGVNV FIDSNEMKGR DLQNLFKRIE 101: NSKMALVIFS DRFSESDWCL NELVKIDDCV KEGKLTVIPV FYRVNTDDVK NFKGKFGSCF IETVQRQSPK EEPMAERWVN SVKSISSKTG FTSEVHRIDS 201: YLVDAIVRDV KRQLPYVPTK EKELPIETEI FFALVLAGLC NFIAPLIFND TSFYKTPQWF VGVLFLVLIR RKFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)