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AT4G19910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain family protein (TAIR:AT4G19920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G19910EnsemblPlants:AT4G19910.1entrez:2745716
Gene3D:3.40.50.10140GeneID:2745716GO:GO:0007165GO:GO:0016021
Gramene:AT4G19910.1hmmpanther:PTHR32009hmmpanther:PTHR32009:SF11InterPro:IPR000157
iPTMnet:F4JU08KEGG:ath:AT4G19910OMA:GMEHIFRPaxDb:F4JU08
Pfam:PF01582Pfscan:PS50104PhylomeDB:F4JU08PROSITE:PS50104
ProteinModelPortal:F4JU08Proteomes:UP000006548RefSeq:NP_974577.1SMART:SM00255
SMR:F4JU08SUPFAM:SSF52200TAIR:AT4G19910TMHMM:TMhelix
UniGene:At.51396UniProt:F4JU08
Coordinates (TAIR10) chr4:-:10795869..10796687
Molecular Weight (calculated) 27796.20 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.20
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIQARPLVF INHGESDQSD GFIRHVERAL NDEGFNVFID SDERRGRGME HIFRAIDNSN VALVIFSDRY TASELCLHEA VRIYDRRREG KLVLIPVFYR
101: VSEDDVNMFN GRFGESFLET LTIQGFRDHP FAEHWMRNVN FICTDTGFTS ADYSSNDTSL VEEIVRAIKR RLQGKKLPRR VQDEKLPSPL DMFMPKQPNA
201: QEGFGKELLY VAIAALLCYF IIPFVFTDWM SSVSFSGSLL F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)