AT4G19900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha 1,4-glycosyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, Golgi stack; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT2G38152.1); Has 54113 Blast hits to 14510 proteins in 385 species: Archae - 4; Bacteria - 200; Metazoa - 877; Fungi - 767; Plants - 50641; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10789144..10791433 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73494.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.23 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRSRRSRSR HGAQACAVMS AVLLLASVSL LYTRLSLFSS HSPNHLRSGS SEDTVLFPDS VLVSDSDVET TGGGGRGSTT STEDRIDEHD DAIEDDGVSN 101: EEDENQDAEQ EQEVDLNRNK AASSSGFYFD HVNGVIRRAF NKRSIDEWDY DYTGFSIDSD SSGDKSSRAA FGSDDVPLDE SIRRKIVEVT SVEDALLLKS 201: GKKVSPLRQG WGDWFDKKGD FLRRDRMFKS NIETLNPLNN PMLQDPDSVG NTGLTRGDKV VQKWRLNQIK RNPFMAKKPL SVVSEKKEPN EFRLLSSVGE 301: IKRGERKTLD NDEKIEREEQ KNVESERKHD EVTEHMYADG TKWGYYPGIE PSLSFSDFMD SFFRKEKCSM RVFMVWNSPG WMFSVRHQRG LESLLSQHRD 401: ACVVVFSETV ELDFFRNSFV KDSYKVAVAM PNLDELLQDT PTHVFASVWF DWRKTKFYPT HYSELVRLAA LYKYGGVYLD SDVIVLGSLS SLRNTIGMED 501: QVAGESLNGA VMSFEKKSPF LLECLNEYYL TYDDKCLRCN GADLLTRVAK RFLNGKNRRM NQQELNIRPS SVFFPINSQQ ITNYFAYPAI EDERSQQDES 601: FKKILNESLT FHFWNSVTSS LIPEPESLVA KFLDHSCIRC SDVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)