AT4G19820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein with chitinase insertion domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein with chitinase insertion domain; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19810.1); Has 5577 Blast hits to 5400 proteins in 1033 species: Archae - 25; Bacteria - 2026; Metazoa - 1733; Fungi - 1226; Plants - 161; Viruses - 107; Other Eukaryotes - 299 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10767436..10768614 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40875.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 366 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSTKLISIT FFLSLLLRFS SAQTVVKATY WFAESESPLA QIDSSLFTHL FCAFADINTL TYQVIVSSRN KPKFSTFTQT VRRRNPTVKT LLSIGGDFTY 101: NFAFASMASN PTSRKLFISS SIKLARSCGF HGLDLNWKYP SITTEMDNFG KLLREWRLAV EAEARSSGKP RLLLTAAVFY SYSYYSVLHP VNAVADSLDW 201: VNLVAYDFYE SGSSRVTCSP APLYDPITTG PSGDAGVRAW TQAGLPAKKA VLGFPLYGYA WCLTDAKNHN YYANSSGPAI SPDGSIGYDQ IRRFIVDNKA 301: TMVYNSNLVQ NYCYAKKTWI GYDDNQSIVM KVKYAKQRGL LGYFSWHIGA DDNSRLSRAG SVLFQF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)