AT4G19800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.642 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein with chitinase insertion domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein with chitinase insertion domain; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19810.1); Has 6350 Blast hits to 6175 proteins in 1151 species: Archae - 27; Bacteria - 2632; Metazoa - 1793; Fungi - 1294; Plants - 157; Viruses - 109; Other Eukaryotes - 338 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10760830..10762104 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44359.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.26 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 398 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSESDVVKAS YWFPATDFPA TDIDSSLFTH LFCTFADLEA ESYEITIATW NQAPFHAFTE TVQQRNPHVK TLLSIGGGNA DKDAFASMAS NPDSRASFIQ 101: STITVARSYG FHGLDLDWEY PRNEEEMYDF GKLLEEWRSA VEAESNSSGT TALILTAAVY YSSNYQGVPY PVLAISNSLD WINLMAYDFY GPGWSTVTGP 201: PASLYLPTDG RSGDSGVRDW TEAGLPAKKA VLGFPYYGWA WTLADPDVNG YDANTTGPAI SDDGEISYRQ LQTWIVDNGA TKVHDDMMVG DYCYAGTTWI 301: GYDSEKSIVT KVIYAKQKGL LGYFSWHVGG DDNSELSSAG STPYHILILC MSWKYSKIYH PIHVINSTNW TIIYNSRKFD ILNFVFIASQ AWDITEME |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)