AT4G19580.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.839 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), WCCH motif (InterPro:IPR005159); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G19570.1); Has 13700 Blast hits to 13690 proteins in 2768 species: Archae - 100; Bacteria - 6424; Metazoa - 2442; Fungi - 948; Plants - 1119; Viruses - 8; Other Eukaryotes - 2659 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:10668367..10669452 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35604.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.13 | ||||||||||||||||||||||||||||||||
| Length | 312 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDCNKEEAKK AMDIAEKKLS KNDYDGAKTF ISKAQALYPK LDGLEQVVMM IDVYISASNK INGEADWYGI LGIDPLADEE AVKKQYKKLA LLLHPDKNRF 101: NGAEGAFKLV RHARDLLSDQ PCLIYNVQGQ TQTQKSQNHT RTRTCVAYDH KRKPKQVKRK RSRTQDPPKP HKYKYKYEFR KRNRMHKPHE YAYECNSDSS 201: ESDPEPDSSW KQKKPRKQEE DITFWTVCKN NKCNTHCKLG KAEVIPEMKY GRPVYSFNAK FQPTSKSTSD ASSSSTTSTS DTANEAQDRE SSQEEFVPAN 301: ASPAARGDAN EA |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)