AT4G19520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10639488..10647070 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 196917.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1744 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVDGKEVYIS FNRWEDTIRH SFVSHLSAEF QRKGVSVFAS EDSASDDRFA EESDAAIAKA RVSVVIFSEN FASSKGCLNE FLKVSKCRRS KGLVVVPVFY 0101: GLTNSIVKKH CLELKKMYPD DKVDEWRNAL WDIADLRGGH VSSHKRSDSE LVEKIVADVR QKLDRRGRIG VYSRLTKIEY LLCKQPGCII RSLGIWGMAG 0201: IGKTTLARAA YDQLSRDFEA SCFIEDFDRE FQEKGFFGLL EKQLGVNPQV TRLSILLKTL RSKRILLVLD DVRKPLGATS FLCEFDWLGP GSLIIVTSQD 0301: KQVLVQCQVN EIYKVQGLNK HESLQLFSRC AFGKDVPDQN LLELSMKFVD YANGNPLALS ICGKNLKGKT PLDMKSVVLE LKRHLSDKIF VKLKSSYDAL 0401: SVSEKEIFLD IVFTFRGANV DNVMQSLAGC GFFPRVGIEA LVDKSFVTVS ENRVQVNNLI YDVGLKIIND QSDEIGMCYR FVDASNSQSL IEHKEIRESE 0501: QGYEDVKAIN LDTSNLPFKG HIAFQHMYNL RYLTIYSSIN PTKDPDLFLP GDPQFLPPEL RLLHWTCYPL HSFPQNFGFQ YLVELNMPCS KLKKLWGGTK 0601: NLEVLKRITL SCSVQLLNVD ELQYSPNIEK IDLKGCLELQ SFPDTGQLQH LRIVDLSTCK KIKSFPKVPP SIRKLHLQGT GIRDLSSLNH SSESQRLTRK 0701: LENVSSSNQD HRKQVLKLKD SSHLGSLPDI VIFESLEVLD FSGCSELEDI QGFPQNLKRL YLAKTAIKEV PSSLCHHISK LVKLDMENCE RLRDLPMGMS 0801: NMKYLAVLKL SGCSNLENIK ELPRNLKELY LAGTAVKEFP STLLETLSEV VLLDLENCKK LQGLPTGMSK LEFLVMLKLS GCSKLEIIVD LPLNLIELYL 0901: AGTAIRELPP SIGDLALLDT LDLKNCNRLR HLPMEMHNLN PLKVLDLSNC SELEVFTSSL PKVRELRPAP TVMLLRSKLP FCFFIFYEHR VTLSLYKARL 1001: QYIPEEIRWM PSLKTLDLSR NGFTEVPVSI KDFSKLLSLR LRYCENLRSL PQLPRSLQLL NAHGCSSLQL ITPDFKQLPR YYTFSNCFGL PSHMVSEVLA 1101: NAPAIVECRK PQQGLENALA CSFCLPSPTS RDSKLYLQPG SSTMIILNPK TRSTLVGFAI LVEVSFSKDF HDTAGLGFRC VCRWNDKKGH AHKRDNIFHC 1201: WAPGEVVPKI NDDHMFVFFD LKMHPSILFE GDVFGILADL VVFEIFPVNK QEMHVGDSCT ITKCGVYVIN DAAGSSSGNT MTPQCSSMDS LKLLDGKGKK 1301: RLRVNYAGLK QREKALFLYI ACLLGGEKAD LLAQFLASTD FVIESTLEDL AGRYLIDISS NGEVMMPPLQ RNFSREIIHM LPASTKELVS MASGSPCNRN 1401: NDVFVSFHGK DFRKQFISDF LKKLVYKGIR ICIGDKILSR SLINKVIKES SIAVVVFSEN YASSSLCLLQ LMEIMKCWEE LGQVVMPIFY KVNPSDIRNQ 1501: SGHFGKGFKK TCKKTINDER QRWSRALTDA ASIAGECSLN WASDADMIEK VANDIRKKLI SSKKLGKQIQ RVDCDHDNPW ETEFNKCIER FFQLPYDGNH 1601: DESLVSLTTE KVIDMKQTLK EIYQITKVKL KNNLVGRRHI NNICFMHILY EKCEERSSFN PTSLHTLYDN GIPYQVYTKR KKHMSGEEKA PIGGCVGCFY 1701: MGQNQGITKA GGGRTMPTAY PAAPQANQGY NAGAQPYPPT AYAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)