AT4G19220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.924 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 48464 Blast hits to 12375 proteins in 167 species: Archae - 0; Bacteria - 4; Metazoa - 37; Fungi - 15; Plants - 47999; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10505266..10508121 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102946.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.94 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 932 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLVMVRSST ISPKSLRLYC SGHIIDSLRH SISRWNSPSG YCSNYYFSKR KHKRHFTSSV LSPVTPIVHN LFDELPEREN RTMESSFMFL RDVLRSFMMR 101: TETETPRSVH CFALKCGLLQ DLATSSKLLT FYGRTGELVS SSCLFDELKE KDVIVWNSMI TALNQNGRYI AAVGLFIEMI HKGNEFDSTT LLLAASALSS 201: LHLSRKCSML HCLAIETGLV GDSSLCNALM NLYAKGENLS SAECVFTHME HRDIVSWNTI MTKCLANGHP RKSLQYFKSM TGSGQEADTV TFSCVISACS 301: SIEELTLGES LHGLVIKSGY SPEAHVSVGN SIISMYSKCG DTEAAETVFE ELVCRDVISS NAILNGFAAN GMFEEAFGIL NQMQSVDKIQ PDIATVVSIT 401: SICGDLSFSR EGRAVHGYTV RMEMQSRALE VINSVIDMYG KCGLTTQAEL LFKTTTHRDL VSWNSMISAF SQNGFTHKAK NLFKEVVSEY SCSKFSLSTV 501: LAILTSCDSS DSLIFGKSVH CWLQKLGDLT SAFLRLETMS ETRDLTSWNS VISGCASSGH HLESLRAFQA MSREGKIRHD LITLLGTISA SGNLGLVLQG 601: RCFHGLAIKS LRELDTQLQN TLITMYGRCK DIESAVKVFG LISDPNLCSW NCVISALSQN KAGREVFQLF RNLKLEPNEI TFVGLLSAST QLGSTSYGMQ 701: AHCHLIRRGF QANPFVSAAL VDMYSSCGML ETGMKVFRNS GVNSISAWNS VISAHGFHGM GEKAMELFKE LSSNSEMEPN KSSFISLLSA CSHSGFIDEG 801: LSYYKQMEEK FGVKPVTEHR VWIVDMLGRA GKLREAYEFI TGIGEPQKAG VWGALLSACN YHGDTKLGKE VAEVLFEMEP DNASYYISLA NTYVGLGGWE 901: EAVRLRKMVE DNALKKLPGY SVIDVRCLDT VS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)