AT4G19110.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.950 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G45430.1); Has 126565 Blast hits to 124971 proteins in 4434 species: Archae - 127; Bacteria - 14032; Metazoa - 47999; Fungi - 13023; Plants - 29702; Viruses - 527; Other Eukaryotes - 21155 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:10454770..10457468 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52518.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 464 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRYKLIKEV GDGTFGSVWR AINKQTGEVV AIKKMKKKYY SWDECINLRE VKSLRRMNHP NIVKLKEVIR ENDILYFVFE YMECNLYQLM KDRQKLFAEA 101: DIKNWCFQVF QGLSYMHQRG YFHRDLKPEN LLVSKDIIKI ADFGLAREVN SSPPFTEYVS TRWYRAPEVL LQSYVYTSKV DMWAMGAIMA ELLSLRPIFP 201: GASEADEIYK ICSVIGTPTE ETWLEGLNLA NTINYQFPQL PGVPLSSLMP SASEDAINLI ERLCSWDPSS RPTAAEVLQH PFFQSCFYVP PSLRPKPSVA 301: RTPPPVGPRG SFEHQSVKRY PVSLANAKPF NSYVSPKSNA AFGSGVQRKL DMVNQDGTRN TKPVRSSVRD SKYRPPGKKS PHNAAAASLN KNRVTRSSVS 401: ETADKLANMT IGATGSRRHS VSVVGQHQQL KPPPMKAGWV GETRDMFLRP TQPTTNAYSR KVAG |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)