AT4G18990.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : xyloglucan endotransglucosylase/hydrolase 29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
xyloglucan endotransglucosylase/hydrolase 29 (XTH29); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 30 (TAIR:AT1G32170.1); Has 2062 Blast hits to 2052 proteins in 284 species: Archae - 2; Bacteria - 225; Metazoa - 0; Fungi - 426; Plants - 1336; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:10401941..10404248 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41217.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 357 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRDSIYLLWI DNRLVVIIMM VMMVSCRCVL GLENINPIFF DEGLSHLFGE GNLIRSPDDR SVRLLLDKYT GSGFISSSMY QHGFFSSLIK LPGAYTAGIV 101: VAFYTSNGDV FVKDHDELDI EFLGNLEGKP WRFQTNMYGN GSTNRGREER YRLWFDPSKE FHRYSILWTP TKIIFWVDDV PIREILRKEE MNGDYPQKPM 201: SLYATIWDAS SWATSGGKFG VDYTFSPFVS EFKDIALDGC NVSDSFPGEN NNNNIGNYNN INCSVSDQFL MSNDYSTISP KQATAMRRFR ERYMYYSYCY 301: DTIRYSVPPP ECVIVTAEKN RFRDTGRLKF GGSHPKVHKA RKKRRRNRST PVVSADL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)