AT4G18870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : E2F/DP family winged-helix DNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
E2F/DP family winged-helix DNA-binding domain; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2839 Blast hits to 1582 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 505; Fungi - 454; Plants - 1509; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10346169..10347227 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34621.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.69 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 291 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKNEGSLTS VSYFITTTYD MVDDLSLDSI ISWSQSGKSF IIWNPEEFYN NLLQRFCFQR INTFFSFLFS HGFRKIDSGK WEFANDNFVR GQRHLINNII 101: SDVIEQEVQY DQGMELFKAE KLFARLVKKV QDQLPPHNSY PTSKLPFPTK IYEMVDDPSS DAIISWSQSG KSFIIWNPQE FCKDHLRRLF NTLHIHFFFY 201: KLKIFGFKKI NPKKWEFAND NFVRGQRHLV EIIISNDKKK NDQLRKQDAR EKKMAEAGEL FKLQIEEMSD MRKKMKKAKE VKEQEVRLCK L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)