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AT4G18840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g18840-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g18840-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g18840-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 40182 Blast hits to 14292 proteins in 243 species: Archae - 8; Bacteria - 21; Metazoa - 44; Fungi - 131; Plants - 39337; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL021711EMBL:AL161549
EMBL:CP002687EnsemblPlants:AT4G18840EnsemblPlants:AT4G18840.1entrez:827618
Gene3D:1.25.40.10GeneID:827618Genevisible:O49399Gramene:AT4G18840.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF340HOGENOM:HOG000237569InParanoid:O49399
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G18840OMA:ERNVESW
PaxDb:O49399Pfam:O49399Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfscan:PS51375PhylomeDB:O49399PIR:E85212
PIR:T05021PRIDE:O49399PRO:PR:O49399PROSITE:PS51375
ProteinModelPortal:O49399Proteomes:UP000006548RefSeq:NP_193619.1SMR:O49399
STRING:3702.AT4G18840.1SUPFAM:SSF48452TAIR:AT4G18840TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65398UniProt:O49399
Coordinates (TAIR10) chr4:-:10338719..10340356
Molecular Weight (calculated) 60845.20 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.02
Length 545 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEKDIYMCA EIIIRPQAYN LRLLQKENLK KMSVCSSTPV PILSFTERAK SLTEIQQAHA FMLKTGLFHD TFSASKLVAF AATNPEPKTV SYAHSILNRI
101: GSPNGFTHNS VIRAYANSST PEVALTVFRE MLLGPVFPDK YSFTFVLKAC AAFCGFEEGR QIHGLFIKSG LVTDVFVENT LVNVYGRSGY FEIARKVLDR
201: MPVRDAVSWN SLLSAYLEKG LVDEARALFD EMEERNVESW NFMISGYAAA GLVKEAKEVF DSMPVRDVVS WNAMVTAYAH VGCYNEVLEV FNKMLDDSTE
301: KPDGFTLVSV LSACASLGSL SQGEWVHVYI DKHGIEIEGF LATALVDMYS KCGKIDKALE VFRATSKRDV STWNSIISDL SVHGLGKDAL EIFSEMVYEG
401: FKPNGITFIG VLSACNHVGM LDQARKLFEM MSSVYRVEPT IEHYGCMVDL LGRMGKIEEA EELVNEIPAD EASILLESLL GACKRFGQLE QAERIANRLL
501: ELNLRDSSGY AQMSNLYASD GRWEKVIDGR RNMRAERVNR SLDVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)