AT4G18720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor IIS protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor IIS protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 634 Blast hits to 606 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 44; Plants - 187; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10299945..10301228 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30802.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 266 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKREFMELF EAALRAAKSV KGDENSPEVS RFVDAMNRLK EAPKSLVCDV VCKTSMGQGL EFFIDHKNPK IRSEGRILRD LWMKFFYASG REKSRDNREA 101: AVKIPTHATM KKTGDSKRDK VREILQTSLA KVASEVVDTE MKTRVTACDP WVVAVSVETA MFENLGCFMG PQKAKYRSIL FNMGDSNNPD LRRKVLLGEI 201: SGERLVKMEK EEMGSSWYTN SRRNPLYEST HYTDFRFPQI KAHLWHKVRV FSLFTYILER TKRSFT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)