AT4G17860.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G46200.1); Has 626 Blast hits to 604 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 6; Plants - 616; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:9924698..9926337 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 41324.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.81 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASYCLLYIF IYLCSYHIAQ TVQKEIEYEC VDIYKQPAFQ HPLMKDHQIQ MRPSVDFQTT VSTEPETSDL FTGKAEERCP KGQVPIHIPQ INYTNDFVQP 101: NRIITEANLH YAIIRPFENY TKIWGGAQAV FNIYKPRVLR NQFSKAWIWL NHREKDVISS IQFGWAVHIG LYRDDRPRLT TYWISNRHQN GCYNVLCRGG 201: YVQVHKTIYP GMAYNKISVL GKRQSTAHLL VGQDSRTKNW LLMTRKTLIG YWPYQIFSMQ GVSQVFFGGY TGGLAGAISP PMGAGTFPRQ VGYRNKFACF 301: MKQLKYFEDK RLVDIDSNEF EEYVDSPKCY DVWYREFEIR SGEMLTFGGP GGQCGI |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)