AT4G17760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : damaged DNA binding;exodeoxyribonuclease IIIs | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
damaged DNA binding;exodeoxyribonuclease IIIs; FUNCTIONS IN: damaged DNA binding, exodeoxyribonuclease III activity; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Repair protein Rad1/Rec1 (InterPro:IPR003021); Has 245 Blast hits to 245 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9871820..9873257 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33321.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 300 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSSSPAIE PDTPDLICQL DNVQGMVDAL TCVRWKRHQD ALVELSEHGI VLIVEESGCL QAKVYLQREL FTKYEYGAQG RPRFGISLGL LVDCLNTFSS 101: PGHSNTIEIK YPGPDMELLL KSVDTLNSCI YSEIRTRIPE TVTWDYNFEQ AGIAPLTFTV KSAALKEAID DLEWPGSSVQ ISLQKEPPCV IFRGEGHGDL 201: QIDFMYYANT DLLLAFHCDT EVSYGYKYKF LKATTANIPG NVVRENRGSK LTIGRGGMLK VQHLVSVSKA LAPQVESAGY QPPSRIAYIE FFVKPEEPAD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)