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AT4G17486.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.446
golgi 0.192
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PPPDE putative thiol peptidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PPPDE putative thiol peptidase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G47310.1); Has 871 Blast hits to 871 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 234; Fungi - 89; Plants - 366; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111H3ZeggNOG:KOG0324EMBL:CP002687EnsemblPlants:AT4G17486
EnsemblPlants:AT4G17486.2entrez:827462ExpressionAtlas:F4JP67GeneID:827462
Gramene:AT4G17486.2hmmpanther:PTHR12378hmmpanther:PTHR12378:SF19InterPro:IPR008580
KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-
KEGG:ath:AT4G17486PaxDb:F4JP67Pfam:PF05903ProteinModelPortal:F4JP67
Proteomes:UP000006548RefSeq:NP_001154248.1SMART:SM01179SMR:F4JP67
STRING:3702.AT4G17486.1TAIR:AT4G17486UniGene:At.27036UniProt:F4JP67
Coordinates (TAIR10) chr4:-:9750063..9751201
Molecular Weight (calculated) 22707.10 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.25
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VPSVIVFCQK AFSLQLLVLF PNALNSPMRM NQTQRHLLCQ MKKDQSSIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)