AT4G17410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DWNN domain, a CCHC-type zinc finger | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT5G47430.1); Has 9457 Blast hits to 6950 proteins in 351 species: Archae - 2; Bacteria - 103; Metazoa - 5659; Fungi - 1428; Plants - 824; Viruses - 57; Other Eukaryotes - 1384 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9716360..9721642 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91311.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||
| Length | 826 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIYYKFKSA RDYDTISMDG PFITVGLLKE KIYETKHLGS GKDLDIVISN AQTNEEYLDE AMLIPKNTSV LIRRVPGRPR IRIITREEPR VEDKVENVQA 101: DMNNVITADA SPVEDEFDEF GNDLYSIPDA PAVHSNNLCH DSAPADDEET KLKALIDTPA LDWHQQGADS FGPGRGYGRG MAGRMGGRGF GMERTTPPPG 201: YVCHRCNVSG HFIQHCSTNG NPNFDVKRVK PPTGIPKSML MATPNGSYSL PSGAVAVLKP NEDAFEKEME GLTSTTRSVG EFPPELKCPL CKEVMRDAAL 301: ASKCCLKSYC DKCIRDHIIA KSMCVCGATH VLADDLLPNK TLRDTINRIL ESGNSSAENA GSMCQVQDME SVRCPPPKAL SPTTSAASGG EKKPAPSNNN 401: ETSTLKPSIE IAEITSAWAS AEIVKVEKPV DASANIQGSS NGKEAAVSQL NTQPPKEEMP QQVASGEQGK RKKKKPRMSG TDLAGPDYMM PMGPGPGNQY 501: FNGFQPGFNG VQHGFNGVQP GFNGFHHGFN GFPGPFPGAM PPFVGYGFGG VIHPDPFAAQ GFGFPNIPPP YRDLAEMGNR MNLQHPIMGR EEFEAKKTEM 601: KRKRENEIRR SEGGNVVRDS EKSRIMNNSA VTSSPVKPKS RQGPPPPISS DYDRRRRSDR SSPERQSSRR FTSPPRSSSR KSERDRHHDL DSEHDRRRDR 701: PRETDRKHRK RSEKSSSDPT VEIDDNNKSN VFTRISFPEE SSGKQRKTSK SSPAPPESSV APVSSGRRHH SRREREMVEY DSSDDEDRHF KRKPSRYKRS 801: PSVAPSDAGD EHFRHSKRSK GERARA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)