AT4G17380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MUTS-like protein 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MUTS-like protein 4 (MSH4); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, synapsis, meiotic prophase I; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: flower, sporocyte; EXPRESSED DURING: petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: MUTS homolog 2 (TAIR:AT3G18524.1); Has 13303 Blast hits to 13154 proteins in 2712 species: Archae - 169; Bacteria - 9120; Metazoa - 661; Fungi - 837; Plants - 451; Viruses - 3; Other Eukaryotes - 2062 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9708742..9714068 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89019.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.75 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 792 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDDGGERSS FVAGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT KTLLRFYDPS VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD 101: TKGAVLIQNL AAEEPLALGL DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFDHMNIDAT SVENLELIDP FHNALLGTSN KKRSLFQMFK 201: TTKTAGGTRL LRANLLQPLK DIETINTRLD CLDELMSNEQ LFFGLSQVLR KFPKETDRVL CHFCFKPKKV TEAVIGFENT RKSQNMISSI ILLKTALDAL 301: PILAKVLKDA KCFLLANVYK SVCENDRYAS IRKKIGEVID DDVLHARVPF VARTQQCFAL KAGIDGFLDI ARRTFCDTSE AIHNLASKYR EEFNLPNLKL 401: PFNNRQGFFF RIPQKEVQGK LPNKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFIRT ETCLEALMDA IREDISALTL LAEVLCLLDM IVNSFAHTIS 501: TKPVDRYSRP ELTDSGPLAI DAGRHPILES IHNDFVSNSI FMSEATNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATIRVVD RIFTRMGTMD 601: NLESNSSTFM TEMRETAFIM QNVTNRSLIV MDELGRATSS SDGLAMAWSC CEYLLSLKAY TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL 701: RDGTLHVPHY GLLLAEVAGL PSTVIDTARI ITKRITDKEN KRIELNCGKH HEIHRIYRVA QRLICLKYSR QTEDSIRQAL QNLNESFTEE RL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)