AT4G17100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.637 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9610164..9612513 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 49417.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGLIRGLVD VAIGGNQRRG GDDGGDDEGN SRDERSRSTW ANVVSGEEED QNRAGGSSHG RRQNSEENQW EKKGERLPTR HSQSHEEDQE ENTYAAKVSE 101: KQDFSESQQE ENDGWETVGK KKPARQSHKV QKEQWQDYKR PASEQHYSDE VETYGNLEPS QLELSGLSEA CNKLWELDLN RLVPGRDYQI DCGDGKRVHE 201: RADMAEGLLF SWVSEEVSRK PTFARFCSLL DNYNPNEGYK EVVTEEERQE QAAFIEEISR TSVIKYLHRY LVLKDVAPGS YLEFKRMLTS LWFDLYGRGG 301: TSGSSSAFEH VFVGEIKQSG GEQVSGFHNW LQFYLEEAKG TVDYQGYIFP RRRGEIPDSE TQLLTIQFEW NGVLKSVSST LVGVSPEFEL ALYTMCFFMG 401: TEDNHIQLGP YNVNVKCYRL GNNRIGSAFP IAES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)