AT4G16940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.600 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16960.1); Has 22000 Blast hits to 14952 proteins in 582 species: Archae - 12; Bacteria - 1007; Metazoa - 1676; Fungi - 89; Plants - 18365; Viruses - 12; Other Eukaryotes - 839 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9533149..9537510 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 130867.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1147 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDHGIVRSCI IADELITAIR EARISIVIFS ENYASSTWCL NELVEIHKCH KDKDLDQMVI PVFYGVDPSH VRKQIGGFGD VFKKTCEDKP EDQKQRWVKA 0101: LTDISNLAGE DLRNGPSEAA MVVKIANDVS NKLFPLPKGF GDLVGIEDHI EAIKLKLCLE SKEARIMVGI WGQSGIGKST IGRALFSQLS SQFHHRAFIT 0201: YKSTSGSDVS GMKLSWEKEL LSEILGQKDI KIEHFGVVEQ RLKHKKVLIL LDDVDNLEFL RTLVGKAEWF GSGSRIIVIT QDRQLLKAHE IDLIYEVKLP 0301: SQGLALKMIC QYAFGKYSPP DDFKELAFEV AKLAGNLPLG LSVLGSSLKR RSKEEWMEML AELQNGLNRD IMKTLRVSYV RLDPKDQDIF HYIAWLFNGW 0401: KVKSIKDFLG DGVNVNIRLK TLDDKSLIRL TPNDTIEMHN LLQKLATEID REESNGNPGK RRFLENAEEI LDVFTDNTGT EKLLGIDFST SSDSQIDKPF 0501: ISIDENSFQG MLNLQFLNIH DHYWWQPRET RLRLPNGLVY LPRKLKWLRW ENCPLKRLPS NFKAEYLVEL RMENSALEKL WNGTQPLGSL KKMNLRNSNN 0601: LKEIPDLSLA TNLEELDLCN CEVLESFPSP LNSESLKFLN LLLCPRLRNF PEIIMQSFIF TDEIEIEVAD CLWNKNLPGL DYLDCLRRCN PSKFRPEHLK 0701: NLTVRGNNML EKLWEGVQSL GKLKRVDLSE CENMIEIPDL SKATNLEILD LSNCKSLVML PSTIGNLQKL YTLNMEECTG LKVLPMDINL SSLHTVHLKG 0801: CSSLRFIPQI SKSIAVLNLD DTAIEEVPCF ENFSRLMELS MRGCKSLRRF PQISTSIQEL NLADTAIEQV PCFIEKFSRL KVLNMSGCKM LKNISPNIFR 0901: LTRLMKVDFT DCGGVITALS DPVTTMEDQN NEKINKVEKR PKCDKDEDDE DEYEYEYDED EDDEDEYGEI YFKFQNCFKL DRAARELILG SCFKTTMVLP 1001: GLLSKLDVND VEFKFNGTRV KRCGIRLLNV STSPDDSEGS SETESPDDSD GDSVTEYHQQ SGEKCDDVET ESSKKRMRMT LGNSEKYFNL PCGQIVTDTV 1101: PLGWGESSSV SFNPWLEGEA LCVDSMITEQ QDAQIHIANV DWEWELW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)