AT4G16900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9512329..9516541 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117669.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1040 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAASSSCSR RYDVFPSFSG VDVRKTFLSN LLEAFDRRSI NTFMDHGIER SRTIAPELIS AIREARISIV IFSKNYASST WCLDELVEIH NRLNDWGQLV 0101: ISVFYDVDPS EVRKQTGEFG DVFKKTCEDK EEDQKQRWMQ ALVDITNIAG EDLRNGPSEA AMVVKIANDV SNKLISPSNS FGDFVGIEAH LEAMNSILCL 0201: ESKEARMVGI WGPSGIGKST IGKALYSQLF CQFHFHAFVP HVYSMKSEWE EIFLSKILGK DIKIGGKLGV VEQMLNQKKV LIVLDDVDDP EFLKTLVGET 0301: KWFGPGSRII VITQDMQLLK AHDIDLLYEV KFPSLDLALK MLCRSAFGEN SPPDDFKALA FEVAVLAGNL PLGLSVLGSS LKRRTKEEWM EMMPRFRNGL 0401: NGDIMKTLRV SYDRLHQKDQ DMFLYIACLF NGFEVSYVND LLEDNVGVTM LVEKSLIRIT PDGDIEMHNL LEKLGIEIDR AKSKETVLGI RFCTAFRSKE 0501: LLPIDEKSFQ GMRNLQCLSV TGDYMDLPQS LVYLPPKLRL LDWDRCPLKC LPYSFKADYL IQLTMMGSKL EKLWEGTVPL GSLKRMNMHG SRYLREISDL 0601: SNARNLEELN LSECRSLVTL SSSIQNAIKL IYLDMRGCTK LESFPTHLNL ESLEYLENCI WNKNLPGLDY LACLVRCMPC EFRPNDLVRL IVRGNQMLEK 0701: LWEGVQSLAS LVEMDMSECG NLTEIPDLSK ATNLVNLYLS NCKSLVTVPS TIGNLQKLVR LEMKECTGLE VLPTDVNLSS LKMLDLSGCS SLRTFPLISK 0801: SIKWLYLENT AIEEVPCCIE NFSWLTVLMM YCCKRLKNIS PNIFRLTILK LVDFTECRGV NVAMSDASVE DHSSYIPLYE NIEYTRHRFW ENLNHKHLAC 0901: RAGGVSDKWE GVGHKLGQRE IMRAKLGSPP RAAGRVTVEL EAAGRLSDQL GGYPDGYLGG YGRTGARPKG RVPKTFRGTR THRKYRKLTI KLSSFRENKS 1001: SEEIGSRTVT GKEEEGSDRP NIVKEGKGNL DLESKDSRIR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)