AT4G16820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G44810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9467563..9469116 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57643.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.74 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQTLTPNADI FHAKRRRFTC NTHTSTLIPT KPLSVSPARK TNKEHLRNLE NVLRTSSNSI DHIENVTSRQ EKTTKNTSTS SLLGGLNLAR IWPQMKAAVD 101: EMSPKNLKRL QRLLSKSSEE RSPKSKLGSK WRELHGLNNW AGLLDPLDEN LRRELVRYGE FVQAAYHAFH SDPEGSPRHV ALPDGSFKVT KSLYATSSVR 201: LPKWIDDVAP DLRWMTKQTS WVGYVAVCDD PREIRRMGRR EIVIALRGTA TLLEWSENFR PNLVSMPEPK PDQSDPTRPK VECGFNSLYT TGDQHAPSLA 301: ESLVGEISRL VELYAGEELS ISVTGHSLGA AIALLAADDI AERVPHAPPV AVFSFGGPRV GNREFADRLD SKGVKVLRVV NSQDVVTKVP GIFADNDKQG 401: QSRNNGRSPG GIMEMVERNN PWAYSHVGAE LRVDMKMSPY LKPNADVACC HDLEAYLHLV DGFLASNCPF RANAKRSLRK LLDEQRSNVK VLYTGKSLRL 501: NRTFHDNGDV LPSPSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)