AT4G16745.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.660 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Exostosin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G19670.1); Has 1386 Blast hits to 1374 proteins in 112 species: Archae - 0; Bacteria - 12; Metazoa - 318; Fungi - 4; Plants - 948; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9412185..9414053 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62990.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNIKSPLRL FIEESIKELI RGFRRQRIKW RNAFLLGSIM TTIVVLLHTP TFSVFSDEEE TESSSSSPIY LNGSLHLNIH IVSSEAKVEN FHTLRTRTPI 101: VQLNASEASE AVLSRKRRKR KKRKKTKDDL ILTDPPPAPR HVLSSSERRA LSLPPKKALT YAKLEIQRAP EVINDTDLFA PLFRNLSVFK RSYELMELIL 201: KVYIYPDGDK PIFHEPHLNG IYASEGWFMK LMESNKQFVT KNPERAHLFY MPYSVKQLQK SIFVPGSHNI KPLSIFLRDY VNMLSIKYPF WNRTHGSDHF 301: LVACHDWGPY TVNEHPELKR NAIKALCNAD LSDGIFVPGK DVSLPETSIR NAGRPLRNIG NGNRVSQRPI LAFFAGNLHG RVRPKLLKHW RNKDEDMKIY 401: GPLPHNVARK MTYVQHMKSS KYCLCPMGYE VNSPRIVEAI YYECVPVVIA DNFMLPFSDV LDWSAFSVVV PEKEIPRLKE ILLEIPMRRY LKMQSNVKMV 501: QRHFLWSPKP RKYDVFHMIL HSIWFNLLNQ NQTSFDDHIP DS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)