AT4G16680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.1); Has 10871 Blast hits to 9975 proteins in 1730 species: Archae - 28; Bacteria - 3668; Metazoa - 2475; Fungi - 1288; Plants - 899; Viruses - 659; Other Eukaryotes - 1854 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9388613..9390774 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74647.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METNVPEKKI LGFPEEMNST IQFLSVEKTT CRLPVSIKFN IPKKISTKRR RISVEEEEEE EDENKTKLSS WEKVLSSDEI LRLREVSRRK YLTDRENKKV 101: EELRDERRYR FPDAYDQEGC IDQKKRFDVA KERYCERRRS GRVVTEQEAW EDHQAQKARV RFGAKDKKQV VDGYEFVFDD LTGFVEESSE AETGKHRGCY 201: SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV AQEVGVKLGH EVGYSIRFED 301: CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD SARIYLIPGR RYPVEKLFRK 401: CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK GTRKVVLATN IAETSLTIDG 501: VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS LGIQDVFNFD FMDPPPENAL 601: LKALELLYAL GALDEIGEIT KGTRSSIDQR TSKFSPTRLG WISMKIQRTS AITLHC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)