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AT4G16550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperone
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperone; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperone (TAIR:AT4G16560.1); Has 208 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JIAReggNOG:ENOG4111CB7EMBL:AL161544EMBL:CP002687
EMBL:Z97341EnsemblPlants:AT4G16550EnsemblPlants:AT4G16550.1entrez:827354
GeneID:827354Gramene:AT4G16550.1HOGENOM:HOG000114096InterPro:IPR002068
InterPro:IPR008978KEGG:ath:AT4G16550OMA:QRSSCISPfscan:PS01031
PIR:E71432PROSITE:PS01031Proteomes:UP000006548RefSeq:NP_193388.1
SMR:O23499SUPFAM:SSF49764TAIR:AT4G16550UniGene:At.54361
UniProt:O23499
Coordinates (TAIR10) chr4:-:9318442..9324254
Molecular Weight (calculated) 81391.60 Da
IEP (calculated) 7.00
GRAVY (calculated) -0.18
Length 743 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSPVTLAPP SPEGFYAINN PFLVNGPKGF LEAKTLDNES YIRFDLPGVP RDGVTVLLDQ PNNTVNILAD APKEHKYDSS HRNYDGTKLR PKISVGGINT
101: KIPCKCCEFF SGFTSHMADG VLRLVLTTSH ASTRRPSCTC ISFLGGSDGE DRVGTATDGF PHATDPNDGY YATNNPYQVN GPKGFTEFKY LEETHDLFVR
201: LDFPGIQKES VIILLEPSKK AVIVTGEAPK ESKHDSSHRK YGTATGLICD CCEISNIQCF VGDGVVRLIL SKQKINLRVP IFCSCKITNL QNVLFFCLIF
301: VGGARMPTDA SPNIIRGYNP EDLSVELLLE TSLRCFSIVN VSDIFHGFVL LIPIVAVAGG HPLAHLRGLN PEGCRGTDPF DPAFTGPTIR PHPSVLEGST
401: SAYETKQLSN GGLYLRIDMP GVPSDGFIVA VDGNGVVTIM GRAPATMHDS NGFYAMNNPY QANGPKGFAE FKYLEDTHDL FVRLDLPGVK KETVGFYAIN
501: NQFQANGPKG FMEFKMLENE DMYVRIDFPG VPRDGVRVFL DQSKKAVCIF ADAPKEHKYD YSERNYGTST GLVCKCCEIS GFTSFMSDGV LRLLLTKSNI
601: TPQRSSCISF LAGPDFREDL RGNGPHKFPH GTDPNDPKLT GRILMPHPCV NYGSEMAYES KQLQNGGLYV RVDMPGVPKE NFTVAVMNGR VRVTGEAPAI
701: SHDSSGRFYT GDVAMLSTPF DIPIRKIKII AKNGVIRLII PPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)