AT4G16550.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.997 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : HSP20-like chaperone | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
HSP20-like chaperone; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperone (TAIR:AT4G16560.1); Has 208 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:9318442..9324254 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 81391.60 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 7.00 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||
Length | 743 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVSPVTLAPP SPEGFYAINN PFLVNGPKGF LEAKTLDNES YIRFDLPGVP RDGVTVLLDQ PNNTVNILAD APKEHKYDSS HRNYDGTKLR PKISVGGINT 101: KIPCKCCEFF SGFTSHMADG VLRLVLTTSH ASTRRPSCTC ISFLGGSDGE DRVGTATDGF PHATDPNDGY YATNNPYQVN GPKGFTEFKY LEETHDLFVR 201: LDFPGIQKES VIILLEPSKK AVIVTGEAPK ESKHDSSHRK YGTATGLICD CCEISNIQCF VGDGVVRLIL SKQKINLRVP IFCSCKITNL QNVLFFCLIF 301: VGGARMPTDA SPNIIRGYNP EDLSVELLLE TSLRCFSIVN VSDIFHGFVL LIPIVAVAGG HPLAHLRGLN PEGCRGTDPF DPAFTGPTIR PHPSVLEGST 401: SAYETKQLSN GGLYLRIDMP GVPSDGFIVA VDGNGVVTIM GRAPATMHDS NGFYAMNNPY QANGPKGFAE FKYLEDTHDL FVRLDLPGVK KETVGFYAIN 501: NQFQANGPKG FMEFKMLENE DMYVRIDFPG VPRDGVRVFL DQSKKAVCIF ADAPKEHKYD YSERNYGTST GLVCKCCEIS GFTSFMSDGV LRLLLTKSNI 601: TPQRSSCISF LAGPDFREDL RGNGPHKFPH GTDPNDPKLT GRILMPHPCV NYGSEMAYES KQLQNGGLYV RVDMPGVPKE NFTVAVMNGR VRVTGEAPAI 701: SHDSSGRFYT GDVAMLSTPF DIPIRKIKII AKNGVIRLII PPV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)