AT4G16530.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.915 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Family of unknown function (DUF577) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Family of unknown function (DUF577); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF577) (TAIR:AT5G37410.1); Has 736 Blast hits to 673 proteins in 194 species: Archae - 0; Bacteria - 81; Metazoa - 201; Fungi - 106; Plants - 128; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:9311355..9315554 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92909.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||
| Length | 803 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEYLNLMLK AREILVSESH EEVAMVIDHL FKRQDSEEYK TSRALYDICV SCNPGCLTLK LLKVYQSSSS GILRLRSISQ LSETLTYLKN QIVFSKFSLD 101: SLYEIKPLLI LCLTMQETKE SDIKILRKIV SFVTYNVVEL HKDKWDELGD CILSLASSKE PVKAFHVFID LPPVYKSFIG KFLDKILEEA SNVFLYPYRV 201: EDWSLALQTF VKMWIQLEKT GVTVELLMAL MEIWISSVVN SVKKLVEMKK EQFLVRGLED FESFFSGDMN LYHYTKDQFH FVLASMNEIE GVVGTETKEI 301: VRKIKMLVTE PYDDLKNRRE EFERGWYDIL KDLSSLEVLK ILASSELEDR SKEIAIRRLN VLLSDHTSKK VQIDISEMRQ LQPLLISCLK EEGLSFNSMF 401: KVLGEVVNHV AYEMLIYQEE TWYELRDYIA SSKTEFHRAV YIFQCLTMAL IDDDFVIPVM ENLFLEIITR LDPPRELLVD NSSWVLAFMG GFCLAIHLIE 501: MSSKAESVKE IAHKMIDSIR ELMEREMEVG LVKRGFRDVE SIVKKQLEWY TMGGHGGLNI LPQKRWNVYN FDNREKVRKE EEAAAREEQI KREEARKRDA 601: ESRLEVLRNV RGLAPLKRAS PEAEKGKDEA VVAAAVVKST AVVVESVESE EPKTGHINLF EGIRIFDPIE IKKNDKPADE EDQRRKKMRK EAAATARASA 701: KDAAARAGDP DEEKYRLGYG VAGKGVKRPW YLEKRNDEND SVRGEDDDGG CGGYEAKKKK MSGKKSLKEL REERLKRERV EKERERALFM KQSQRAGGFS 801: RRR |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)