AT4G16420.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : homolog of yeast ADA2 2B | ||||||||||||||||
| Curator Summary (TAIR10) |
Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations. | ||||||||||||||||
| Computational Description (TAIR10) |
homolog of yeast ADA2 2B (ADA2B); CONTAINS InterPro DOMAIN/s: SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homolog of yeast ADA2 2A (TAIR:AT3G07740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9262805..9265775 | ||||||||||||||||
| Molecular Weight (calculated) | 55726.30 Da | ||||||||||||||||
| IEP (calculated) | 6.78 | ||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL 101: ICPDWSADDE MLLLEGLEIY GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD KKAEQNMKEE YPFSPPKVKV 201: EDTQKDRSFG GKKPVSTSVN NSLVELSNYN QKREEFDPEY DNDAEQLLAE MEFKENDTPE EHELKLRVLR IYSKRLDERK RRKEFIIERN LLYPNPFEKD 301: LSQEEKVQCR RLDVFMRFHS KEEHDELLRN VVSEYRMVKR LKDLKEAQVA GCRSTAEAER YLGRKRKREN EEGMNRGKES GQFGQIAGEM GSRPPVQASS 401: SYVNDLDLIG FTESQLLSES EKRLCSEVKL VPPVYLQMQQ VMSHEIFKGN VTKKSDAYSL FKIDPTKVDR VYDMLVKKGI AQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)