AT4G15820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8992970..8995022 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51277.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVFRCAVFL SPSSFLPSYS TGRRVSNPKS KAQETVIIGI ETPENDPSSD VVSDVEEIQV LSSSVVSNEV NGISTKISPK LVAKYGLWLI GIFAFQTVCA 101: VLFLGDSTKS EKTPEVSSDS EGNNLVLLED VEMNEKIAEI RMMAREARKS EGKQEEDDET GIDIEKEIEA RLSNMEKRLN SQRKGLAGLR VEPLDESGND 201: EKSLMFEKKY KFKAEKPPMG NVKGFGGSKG SDEIMSGTEK TGKNGSASES RDGEKNPEEQ LQESVFRDGA AQESEQRRPS NEVKKSRKSG NRVGGTPNMK 301: AGSGFGSTSL SEKHGDVRKG KPLRRAKEKQ SEKENKLWWL KLPYVLRILM RSNIDQDISE GYFTLRTESM EQNEGQVSHM IAFEDQSDAR NFSYLLESVF 401: EDLDDFSADI APVTTKDLYD EVSSGGKNVI VVRKRQLTLY AGQPFEDVER ALRTLIQERR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)