AT4G15570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.510 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:8893043..8898858 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91544.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 818 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIDNGKLQE EEASSVTRFY NIILGWDYKQ LTKENERKNR KDSKEKLNVV KNTYKDVDDY FETFEPLLFE EVKAQILQNK DGEEASVCKM RLVMECNEGE 101: GFHFLLVTYE HEEDEYLAQN DLLLLSKEEV KGNSFPSSYG FAVVEHRQNN LLRLRMYLAE DIVQITKNTK SSRTKSFIQA LSNMRSLITS SASPIDKRVF 201: SLKLCGLSTI IREYIALRSV SSLPFKDLIF TAAEKSCGFG DEAWKISGPL NEFFNENLNK SQKEAIDVGL SRKSFVLIQG PPGTGKTQTI LSILGAIMHA 301: TPARVQSKGT DHEVKRGIQM TIQEKYNHWG RASPWILGVN PRDAIMPEDG DDGFFPTSGN ELKPEVVNAS RKYRLRVLVC APSNSALDEI VLRLLSSGLR 401: DENAQTYTPK IVRIGLKAHH SVASVSLDHL VAQKRGSAID KPKQGTTGTD IDSIRTAILE EAAIVFATLS FSGSALLAKS NRGFDVVIID EAAQAVEPAT 501: LIPLATRCKQ VFLVGDPKQL PATVISTVAQ DSGYGTSMFE RLQKAGYPVK MLKTQYRMHP EIRSFPSKQF YEGALEDGSD IEAQTTRDWH KYRCFGPFCF 601: FDIHEGKESQ HPGATGSRVN LDEVEFVLLI YHRLVTMYPE LKSSSQLAII SPYNYQVKTF KDRFKEMFGT EAEKVVDINT VDGFQGREKD VAIFSCVRAN 701: ENGQIGFLSN SRRMNVGITR AKSSVLVVGS AATLKSDPLW KNLIESAEQR NRLFKVSKPL NNFFSEENLE TMKLTEDMEI PDAPLYEDES LPVAPYGGDD 801: DFGDGDADQD DVAMAGED |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)