AT4G15370.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.991 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : baruol synthase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
baruol synthase 1 (BARS1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: pentacyclic triterpene synthase 1 (TAIR:AT4G15340.1); Has 1967 Blast hits to 1902 proteins in 561 species: Archae - 2; Bacteria - 837; Metazoa - 81; Fungi - 237; Plants - 604; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:8773786..8779685 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 87459.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 759 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MWRLRIGAKA KDNTHLFTTN NYVGRQIWEF DANAGSPEEL AEVEEARRNF SNNRSRFKAS ADLLWRMQFL REKKFEQKIP RVIVEDAEKI TYEDAKTALR 101: RGLLYFTALQ ADDGHWPAEN AGSIFFNAPF VICLYITGHL EKIFTHEHRV ELLRYMYNHQ NEDGGWGLHV ESPSNMFCSV INYICLRILG VEAGHDDKGS 201: ACARARKWIL DHGGATYSPL IGKAWLSVLG VYDWSGCKPI PPEFWFLPSF FPVNGGTLWI YLRDIFMGLS YLYGKNFVAT STPLILQLRE EIYPEPYTNI 301: SWRQARNRCA KEDLYYPQSF LQDLFWKGVH VFSENILNRW PFNNLIRQRA LRTTMELVHY HDEATRYITG GSVPKVIAVF HMLACWVEDP ESDYFKKHLA 401: RVPDFIWIGE DGLKIQSFGS QVWDTALSLH VFIDGFDDDV DEEIRSTLLK GYDYLEKSQV TENPPGDYMK MFRHMAKGGW TFSDQDQGWP VSDCTAESLE 501: CCLFFESMSS EFIGKKMDVE KLYDAVDFLL YLQSDNGGIT AWQPADGKLV EFIEDAVVEH EYVECTGSAI VALAQFNKQF PGYKKEEVER FITKGVKYIE 601: DLQMVDGSWY GNWGVCFIYG TFFAVRGLVA AGKCYNNCEA IRRAVRFILD TQNTEGGWGE SYLSCPRKKY IPLIGNKTNV VNTGQALMVL IMGNQMKRDP 701: LPVHRAAKVL INSQMDNGDF PQQEIMGVFK MNVMLHFPTY RNMFTLWALT HYTKALRGL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)