AT4G15236.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC-2 and Plant PDR ABC-type transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ABC-2 and Plant PDR ABC-type transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT4G15233.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8696683..8702727 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 157401.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1388 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPQTDGVEFA SRNNLENGDG DQVRSQWVAI ERSPTCKRIT TALFCKRDEQ GKRSQRRVMD VSKLEDLDRR LFIDELIRHV EDDNRVLLQK IRTRTDEVGI 0101: DLPKIEVRFS DLFVEAECEV VHGKPIPTLW NAIASKLSRF TFSKQEDKIS ILKGVSGIIR PKRMTLLLGP PGCGKTTLLL ALSGRLDPSL KTRGEVSYNG 0201: HLFSEFVPEK TSSYVSQNDL HIPELSVRET LDFSGCFQGA GSRLEMMKEI SRREKLKGIV PDPDIDAYMK AASIEGSKTN LQTDYILKIL GLTICADTRV 0301: GDASRPGISG GQKRRLTTGE MIVGPIKTLF MDEISNGLDS STTFQILSCL QQFARLSEGT ILVSLLQPAP ETFELFDDLI LMGEGKIIYH GPRDFICSFF 0401: EDCGFKCPQR KSVAEFLQEV ISRKDQEQYW CHRDKPYCYV SIDSFIEKFK KSDLGLQLQD ELSKTYDKSQ TQKDGLCIRK YSLSNWDMFK ACSRREFLLM 0501: KRNSFVYVFK SGLLIFIGSI AMTVYLRTGS TRDSLHANYL LGSLFFSLIK LLADGLPELT LTVSRIAVFC KQKELYFYPA WAYAIPSAIL KIPISFLESF 0601: LWTMLTYYVI GYSPEAGRFI RQVLILFALH LSCISMFRAI GAVFRDFDVA TTIGSISIVL LSVFGGFIVR KPSMPSWLEW GFWLSPLSYA EIGLTSNEFF 0701: APMWRKMTSE NRTLGEQVLD ARGLNFGNQS YWNAFGALIG FTLFFNTVFA LALTFLKTSQ RSRVIVSHDK NTQSSEKDSK IASHSKNALP FEPLTFTFQD 0801: VQYFIETPQG KKLQLLSDVT GAFKPGVLTA LMGVSGAGKT TLLDVLSGRK TRGDIKGQIE VGGYVKVQDT FSRVSGYCEQ FDIHSPNLTV QESLKYSAWL 0901: RLPCNISSET KSAIVNEVLE TIELEEIKDS LVGVPGISGV TAEQRKRLTI AVELVSNPSI IFMDEPTTGL DARAAAIVMR AVKNIAETGR TVVCTIHQPS 1001: IDIFEAFDEL ILMKNGGKII YYGPLGQHSS KVIEYFMSIP GVPKLKENSN PATWILDITS KSSEDKLGVD LAHIYEESTL FKENKMVIEQ TRCTSLGSER 1101: LILSSRYAQT SWEQFKACLW KQHLSYWRNP SYNLTRIIFM CFTCMLCGIL FLQKAKEINN QQDLFNVFGS MFTVVLFSGI NNCSTVIFCV ATERNVFYRE 1201: RFSRMYNPWA YSLAQVLVEI PYSLFQSIIY VIIVYPMVGY HWSVYKVFWS FYSIFCSLLI FNYFGMLLVV VTPNVHIAFT LRSSFYAIVN LFAGYVMPKP 1301: NIPRWWIWMY YLSPTSWVLN GLLTSQYGDM EKEILAFGEK KKVSAFLEDY FGYRYDSLAL VAVVLIAFPI LLASLFAFFI GKLNFQKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)