AT4G15215.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pleiotropic drug resistance 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pleiotropic drug resistance 13 (PDR13); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 2 (TAIR:AT4G15230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8672070..8678874 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 156596.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.88 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1390 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQTGEDVDK AKSFQVEFAC GNGVDDEEKL RSQWATVERL PTFKRVTTAL LHTGDDSSDI IDVTKLEDAE RRLLIEKLVK QIEADNLRLL RKIRKRIDEV 0101: GIELPTVEVR FNDLSVEAEC QVVHGKPIPT LWNTIKGSLS KFVCSKKETK IGILKGVSGI VRPGRMTLLL GPPGCGKTTL LQALSGRLSH SVKVGGKVSY 0201: NGCLLSEFIP EKTSSYISQN DLHIPELSVR ETLDFSACCQ GIGSRMEIMK EISRREKLKE IVPDPDIDAY MKAISVEGLK NSMQTDYILK ILGLDICADT 0301: RAGDATRPGI SGGQKRRLTT ATTLLMDEIS NGLDSSTTFQ IVSCLQQLAH IAGATILISL LQPAPETFEL FDDVILLGEG KIIYHAPRAD ICKFFEGCGF 0401: KCPERKGVAD FLQEVMSRKD QEQYWCHRSK PYSYISVDSF IKKFNESNLG FLLKEELSKP FDKSQTRKDS LCFRKYSLSK WEMLKACSRR EILLMKRNSF 0501: IYLFKSGLLV FNALVTMTVF LQAGATRDAR HGNYLMGSMF TALFRLLADG LPELTLTISR LGVFCKQKDL YFYPAWAYAI PSIILRIPLS VLDSFIWTVL 0601: TYYVIGYSPE VGRFFRHFII LLTFHLSCIS MFRAIASICR TFVACSITGA ISVLLLALFG GFVIPKSSMP TWLGWGFWLS PLSYAEIGLT ANEFFSPRWR 0701: KLTSGNITAG EQVLDVRGLN FGRHSYWTAF GALVGFVLFF NALYTLALTY RNNPQRSRAI VSHGKNSQCS EEDFKPCPEI TSRAKTGKVI LPFKPLTVTF 0801: QNVQYYIETP QGKTRQLLFD ITGALKPGVL TSLMGVSGAG KTTLLDVLSG RKTRGIIKGE IRVGGYPKVQ ETFARVSGYC EQFDIHSPNI TVEESLKYSA 0901: WLRLPYNIDA KTKNELVKEV LETVELEDIK DSMVGLPGIS GLSTEQRKRL TIAVELVSNP SIIFLDEPTT GLDARAAAIV MRAVKNVAET GRTVVCTIHQ 1001: PSIDIFETFD ELILMKDGGQ LVYYGPLGKH SSKVIKYFES IPGVPKVQKN CNPATWMLDI TCKSAEHRLG MDFAQAYKDS TLYKENKMVV EQLSSASLGS 1101: EALSFPSRYS QTGWGQLKAC LWKQHCSYWR NPSHNLTRIV FILLNSLLCS LLFWQKAKDI NNQQDLFSIF GSMYTIVIFS GINNCATVMN FIATERNVFY 1201: RERFARMYSS WAYSFSQVLV EVPYSLLQSL LCTIIVYPMI GYHMSVYKMF WSLYSIFCSL LIFNYCGMLM VALTPNIHMA LTLRSTFFSM VNLFAGFVMP 1301: KQKIPKWWIW MYYLSPTSWV LEGLLSSQYG DVEKEITVFG EKKSVSAFLE DYFGYKHDSL AVVAFVLIAF PIIVASLFAF FMSKLNFQKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)