AT4G15060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.876 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8599035..8601761 | ||||||||||||
| Molecular Weight (calculated) | 62518.00 Da | ||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||
| Length | 539 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPNLEEADIS STYPDIYKFV RSVTSVKRLS LCIRVNAEEA LYPDGIVFNQ LENLKLCPCD SNWSKLFVRL LKYSPNLREL EVSLNEGHTK CCVDPQVSLE 101: NQLNFVPECL LSSLQTFKWT GIHGSLKVMD LAKYILRNAR CLKTATILFQ PALETERETM IQELLLSFRD MDKISRLPDD LLVKVLLFLP TKIAVSTSIL 201: SKRWEFLWMW LPKLEYHNTN YSASEEQRLR SFINLNLQLH RAPIIESLRL KFSLGRSIKP QNIKQWIIIA VFRCVRELSI NLFPLYCIEN PAKLPSSLYI 301: SKSLVILKLK DQILVDVPRM AYLPSLKYLL LKRVTYKDSN SLHQLLSSCP VLKNLVVERD EYNHDETLSI TVSSLQRLTL KISRGGSFDE LVINTPSLKY 401: FKLTDYLGEC ETELDDDSYS YVFKDMPKLE EAHIDSTYPD IGKFVRSITS VKRLSLCVKV NAEEDSPNLR ELEIKLNKDH KASFDDPACL ENQLNYVVQS 501: SIPSLERFTW TWIYGSQNEI DYLEKLKKRL LLTNWQNLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)