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AT4G14690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chlorophyll A-B binding family protein
Curator
Summary (TAIR10)
Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.
Computational
Description (TAIR10)
EARLY LIGHT-INDUCIBLE PROTEIN 2 (ELIP2); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT3G22840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12416eggNOG:ENOG410IX81eggNOG:ENOG410Y0RGEMBL:AF134132
EMBL:AF370266EMBL:AL161539EMBL:AY063083EMBL:AY088811
EMBL:CP002687EMBL:Z26549EMBL:Z97336EnsemblPlants:AT4G14690
EnsemblPlants:AT4G14690.1entrez:827119GeneID:827119Genevisible:Q94K66
GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0010030
GO:GO:0010114GO:GO:0010117GO:GO:0010218GO:GO:0010224
GO:GO:0010380GO:GO:0015979GO:GO:0016021GO:GO:0034605
GO:GO:0071483GO:GO:0071486GO:GO:0071490GO:GO:0071491
GO:GO:0071492Gramene:AT4G14690.1hmmpanther:PTHR14154hmmpanther:PTHR14154:SF5
HOGENOM:HOG000237710InParanoid:Q94K66InterPro:IPR022796InterPro:IPR023329
KEGG:ath:AT4G14690OMA:FFKRIAPPaxDb:Q94K66Pfam:PF00504
Pfam:Q94K66PhylomeDB:Q94K66PIR:F71409PIR:T52309
PRIDE:Q94K66PRO:PR:Q94K66ProteinModelPortal:Q94K66Proteomes:UP000006548
RefSeq:NP_567438.1SMR:Q94K66STRING:3702.AT4G14690.1SUPFAM:0043399
SUPFAM:SSF103511TAIR:AT4G14690tair10-symbols:ELIP2TMHMM:TMhelix
UniGene:At.4292UniGene:At.74116UniProt:Q94K66
Coordinates (TAIR10) chr4:+:8418373..8419129
Molecular Weight (calculated) 20345.80 Da
IEP (calculated) 10.35
GRAVY (calculated) 0.17
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MATASFNMQS VFAAPSGVLT TRNIRNTNQL FFKRIAPVGV RCMAQGDPIK EDPSVPSTST SATPPQMPQS PPPPVSKPKV STKFGDLLAF SGPAPERING
101: RLAMVGFVAA IAMELSKGEN VFAQISDGGV GWFLGTTALL TLASMVPLFK GIRAEAKSKG FMTSDAELWN GRFAMLGLVA LAFTEYVTGG TLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)