AT4G14670.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.911 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : casein lytic proteinase B2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
casein lytic proteinase B2 (CLPB2); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: heat shock protein 101 (TAIR:AT1G74310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:8410054..8412557 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68901.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNDLKFDPNV KLILASARSH AMSLSHGQVT PLHLGVTLIS DLTSVFYRAI TSAGDGDISA QSVVNVINQS LYKLTKRNLG DTKVGVAVLV ISLLEDSQIS 101: DVLKEAGVVP EKVKSEVEKL RGEVILRALK TYGTDLVEQA GKLDPVIGRH REIRRVIEVL SRRTKNNPVL IGEPGVGKTA VVEGLAQRIL KGDVPINLTG 201: VKLISLEFGA MVAGTTLRGQ FEERLKSVLK AVEEAQGKVV LFIDEIHMAL GACKASGSTD AAKLLKPMLA RGQLRFIGAT TLEEYRTHVE KDAAFERRFQ 301: QVFVAEPSVP DTISILRGLK EKYEGHHGVR IQDRALVLSA QLSERYITGR RLPDKAIDLV DESCAHVKAQ LDIQPEEIDS LERKVMQLEI EIHALEKEKD 401: DKASEARLSE VRKELDDLRD KLEPLTIKYK KEKKIINETR RLKQNRDDLM IALQEAERQH DVPKAAVLKY GAIQEVESAI AKLEKSAKDN VMLTETVGPE 501: NIAEVVSRWT GIPVTRLDQN EKKRLISLAD KLHERVVGQD EAVKAVAAAI LRSRVGLGRP QQPSGSFLFL GPTGVGKTEL AKALAEQLFD SENLLVRLDM 601: SEYNDKFSVN KLIGAPPGYV HWS |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)