AT4G14370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.599 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G16870.1); Has 20031 Blast hits to 15847 proteins in 637 species: Archae - 20; Bacteria - 2181; Metazoa - 1543; Fungi - 27; Plants - 15753; Viruses - 2; Other Eukaryotes - 505 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8279946..8283263 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115194.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1008 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFDDQEIERS QTIAPALIKA IKESRISIIL LSKNYASSSW CLDELLEIVK CKEAMGQIVM TVFYGVDPSD VRKQTGEFGR SFNETCSRST KEKRRKWSQA 0101: LNHVGNIAGE HFQNWDNESK MIEKISRDIS NKLNSTISRD FDDMVGLEAH LEEMKYLLDL DYKDGAMIVG ICGPAGIGKT TIARALYSLL LSSFQLSCFV 0201: ENLSGSDNRG LDEYGFKLRL QEQLLSKILN QNGMRIYHLG AIQERLCDQK VLIVLDDVND LKQLEALANE TSWFGPGSRI IVTTEDKGLL EQHGINKTYH 0301: VGFPSIEEAL EIFCIYAFRK SSPPDGFKKL TKRVTNVFDN LPLGLRVMGS SLRGKGEDEW EALLDRLETS LDRNIEGALR VGYDSLQEEE QALFLHIAVF 0401: FNYNKDEHVI AMLADSNLDV KQGLKILTNK SLVYRSTSGK IVMHKLLQQV GRKAIQRQEP WKRHILIDAH EICYVLENDT DTRAALGISL DTSGINKVII 0501: SEGAFKRMRN LRFLSVYNTR YVKNDQVDIP EDLEFPPHLR LLRWEAYPSN ALPTTFHPEY LVELDMKESQ LEKLWQGTQP LTNLKKMDLT RSSHLKELPD 0601: LSNATNLERL ELSYCKSLVE IPSSFSELRK LETLVIHNCT KLEVVPTLIN LASLDFFNMH GCFQLKKFPG ISTHISRLVI DDTLVEELPT SIILCTRLRT 0701: LMISGSGNFK TLTYLPLSLT YLDLRCTGIE KIPDWIKDLH ELSFLHIGGC RNLKSLPQLP LSIRWLNACD CESLESVACV SSLNSFVDLN FTNCFKLNQE 0801: TRRDLIQQSF FRSLRILPGR EVPETFNHQA KGNVLTIRPE SDSQFSASSR FKACFVISPT RLITGRKRLI SLLCRLISKN GDSINEVYHC FSLPDQSPGT 0901: QSEHLCLFHY DFHDRDRYFE VDSEILFEFS CTPSDAYEIV QCGVGTYGEE IEQISDWSNA SEEIETENIS DDVNQYRDRH PCKSDKASKE ANVKGHKRKG 1001: FWSWLRRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)