AT4G14250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.932 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : structural constituent of ribosome | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), UAS (InterPro:IPR006577), Ribosomal protein L2, C-terminal (InterPro:IPR022669), UBX (InterPro:IPR001012), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UBX domain-containing protein (TAIR:AT1G59550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8208985..8213237 | ||||||||||||
| Molecular Weight (calculated) | 93750.10 Da | ||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||
| Length | 821 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METATRTHQQ RKLISSFLDI TVNQTVEIAT QFLEATTWNL EDAINLFLIA RRNPHHHHGE ELVPLPLPSK KNTLYDYDPF MSHNTSVAVC PEEIWDDEST 101: SEESDSRLSS LYRPPPSLFF HGSFEDAKAT SSREDLWLLV NLHEGQKIST FYKIDSVPPV VLLIDPITGQ KMRMWSGVIE PQGFLEDLMK YMDSGPHEHV 201: ASLTSNKRMK TEKISCSSNN ADDQDMATFW GNAIEEEKTV IKSGKEETFT SDRVVAPSWG PEFEDIMTLS EHEEETCLSC DLLEFPVLTE EPKADCDRSV 301: VCSICVRFPD GRRKQRKFLK SEPIQLLWSF CYSHMEESEK KEFKLVQAIP GASKTLDYGA KATFDQSGIA NSMISVTWDI NLPLDSKKTV LSGCRVMIGQ 401: IASSGLTKKL MIKRNMWAKV RGVAMMNPVE HPHGGRSTNL VFPRDRCRSD RRNRKILLQT TDWNIDQAVN LFLTNNAMYR EVVDSTTSGT SDDSDSRSSF 501: SFPPPSYILH EGLFEYAKYV SIEKNLWLVV NLQSRTELGS HILNRDVWAN DAVSRTIESH FIVWQVYDDT NEGQKISSFY KIEAPPPVVF VINPITGQKM 601: HMWSGVIEAE SIVEDLMMFW DAGPHENIAS LTRNRRTETA ETCLSSYNFY ETPAPSWGEE FEEEDNWSSR SNNNQVVAPT WEKELEEQDE WEIWSSRSDT 701: DDFVPPFMGD EYEDPDEVKE EEICLVFPVL TEEPKGDCDR SVVCSLCVRF PDGRRKQRKF LKSEPIQLLW SFCYSHIDES EKKAFKLVQA IPGASKTLDC 801: EADATFDQSG LANSLISVTW E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)