AT4G14200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8185524..8188667 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 84679.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.35 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||
| Length | 784 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSQDHCSNS PGGGKNHVCT KCGWSYSNPH PSAKNRRAHK KICGTIKGFE IFDSEMKKEN LDLPEEHSLD DEQKPPTPSP TVVEKSAPTV VEKAANERIG 101: DVSEEDVFTD AVCEFSRSDS FKEETATNFP AKGTENPGET QQCNNSSTAC EMKSSEVVQD SCEVPPVEVE SASENRQGAQ HSTEGHSMSS ETVIESSQEA 201: QVIDGGDTIS NDRLETECKG KLTKESQSKL ASALGKREDT SDSSWNDEVI YSDVEGPYGF SSEATSMTHP DEASCIVSED VPVHTSPVKA DATQVISASK 301: SVPDDMPFVE NADVYLHGIK GFEEFEVSHS VNPFLPETSK GEECEIDTLT EAENLGIKPE GLSIGSEVSS SDKLLAGDKT EPQGQTDLVA VKEFPSAENI 401: LISKINSEDI GMKAEEGKSS LGNAQTVESE TLRVSLPAVD SVVVDSNADM SSAANKTGLV DLAGNESELM QANVVAEKGN KPKDTLSSES SCYASPVSVV 501: FEGSDASDQI KSSTETSKDS ALQISAESKD EVCRESNNGR LVEESSFINE PNKTEYPISH FGSTGTAPDT VNTANQTSLE IGRTEFNRVV GGLGVIQANE 601: VDGNVKAHNN YAEVPVTIES NDHRDFGRLQ NLSEAHIRSL VSSPLVTRNN TSNASESNLG PVSGLSAGVN KQEDASQNQE ITLEKTTSWG TAKEQHVPLK 701: NLLSEARSPR LQQQAKDHES NNIPRVSSIL GQETSPEDGH WPEKREVSEE WNSPAKYPVD LKREEKKVKG RPFWVPFVCC SNVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)