AT4G13992.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.434 cytosol 0.343 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G16015.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8087340..8089268 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73923.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 642 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTYDKLRRY YLLYQTRGLK CDGCNLGRDY YSIGHRCFRS GLFFHNECAE SSVEIHNLYH PQHSLHIKVL KQNEDVHGEC KLCRGNLAKI YYQCSTCDFA 101: IDLICARKKV VATIEVPKTH DHPLSLIPKM ITFTCHLCGL LDDRFPYACN LCDITFHKDC AESTPEINYS CHPQHLLKRL THVPSYTDGK CCLCGSKLHN 201: LFYHCSICNF SVDVNCEKNP PSFTLFHPKA HEHKLTLMPQ RSFVCSACGM DDDPNPYVCP QCNFMIHRSC IDIPRVIKIY RHDHHICYNN FLDAGDWKCG 301: ICHKKINWTC GAYSCSECPD LVMHLRCATR FGIWNGIELE GISKNTLKVK SYEEIEEGVI KHFSHDHTLK FKEGSDGNGE CIQCTICTYP IFSNPFYSCM 401: ECDDFILHKK CVDLPKKKID SFYKMSTSLI TNYQGNAENI CNACQNIYQG FSYLSDDGNT LLDVRCGSIS EPFFHESHPH SLYVSYLTGG RFCNACREKA 501: TMVLSCEECE FVLDIKCSTL PNIVKHENDK DHLLSLCYGE NKCEQCWCEM CEETINPKKW FYSCDHCGIA FHIRCTLGDF IWFKPEKKSE SSTNCVILNN 601: RASRPFCYSC NSRCKYPSIL FFYGKTLCSL QCFQQKVYAI LA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)