AT4G13965.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.456 golgi 0.352 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G55030.1); Has 835 Blast hits to 820 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 6; Plants - 822; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8066138..8067435 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42959.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||
| Length | 376 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPKLNFDSL DQRHEFKTFS KNVKRALLSH KAPVLHSLHL IVHLHLCNSM NTAKLIGIAF ACNLRKLVLE VDGGRFSIPE SLYNCETLDT LELKYSILMD 101: VPSSICLKSL RTLHLHYVDF KDNESALNLL SGCPNLENLV VHRYPFSSVK TYTIAVSSLK RLTIYTSSTV DPRAGYVINS PSLTYLKIVG QIGFCLIENV 201: PELVEASMIV SSQIINKNLL ESLTSVKRLF LEFSPLMIKF PAGSIFYQLV YLELLTHEAE CLNLLTLMLN SSPKLQILKL LSPKYQSWKK DVVGKWNKPK 301: IVPECLLFHL ETFMWKGYEW KRNDETEVAK YILSNTNRLK RATFFSKPIS SEERVKMVKN LNSVVRALNS CQLLIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)