AT4G13920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.570 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 50 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 50 (RLP50); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8043861..8046536 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98339.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 891 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITIIWSLCL IFCLSNSILV IAKDLCLPDQ RDALLEFKNE FSIPSPDSDL MLILQTTAKW RNNTDCCSWG GISCDPKTGV VVELDLGNSD LNGRLRSNSS 101: LFRLQHLQSL DLSYNDLSCT LPDSSGNFKY LRVLNLLGCN LFGEIPTSLR SLSYLTDLDL SYNDDLTGEI LDSMGNLKHL RVLSLTSCKF TGKIPSSLGN 201: LTYLTDLDLS WNYFTGELPD SMGNLKSLRV LNLHRCNFFG KIPTSLGSLS NLTDLDISKN EFTSEGPDSM SSLNRLTDFQ LMLLNLSSLT NVDLSSNQFK 301: AMLPSNMSSL SKLEAFDISG NSFSGTIPSS LFMLPSLIKL DLGTNDFSGP LKIGNISSPS NLQELYIGEN NINGPIPRSI LKLVGLSALS LSFWDTGGIV 401: DFSIFLQLKS LRSLDLSGIN LNISSSHHLP SHMMHLILSS CNISQFPKFL ENQTSLYHLD ISANQIEGQV PEWLWRLPTL RYVNIAQNAF SGELTMLPNP 501: IYSFIASDNK FSGEIPRAVC EIGTLVLSNN NFSGSIPPCF EISNKTLSIL HLRNNSLSGV IPEESLHGYL RSLDVGSNRL SGQFPKSLIN CSYLQFLNVE 601: ENRINDTFPS WLKSLPNLQL LVLRSNEFHG PIFSPGDSLS FSKLRFFDIS ENRFSGVLPS DYFVGWSVMS SFVDIIDNTP GFTVVGDDQE SFHKSVVLTI 701: KGLNMELVGS GFEIYKTIDV SGNRLEGDIP ESIGILKELI VLNMSNNAFT GHIPPSLSNL SNLQSLDLSQ NRLSGSIPGE LGELTFLARM NFSYNMLEGP 801: IPQGTQIQSQ NSSSFAENPG LCGAPLQKKC GGEEEEDKEK EEKDKGLSWV AAAIGYVPGL FCGLAIGHIL TSYKRDWFMR IFSCFSSPLK K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)