AT4G13880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.787 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 48 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 48 (RLP48); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.2); Has 81614 Blast hits to 24875 proteins in 996 species: Archae - 37; Bacteria - 6005; Metazoa - 13733; Fungi - 821; Plants - 54574; Viruses - 20; Other Eukaryotes - 6424 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8026151..8028614 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80977.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 725 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHSCSERRMM TVIWSLCLIF CLSNSILAIA KDLCLPDQRD ALLEFKNEFY VQEFDPHMKC EKATETWRNK TDCCSWNRVS CDPKTGKVVE LDLMSSCLNG 101: PLRSNSSLFR LQHLQSLELS SNNISGILPD SIGNLKYLRS LSFRTCHLFG KIPSSLGSLS YLTHLDLSYN DFTSEGPDSG GNLNRLTDLQ LVLLNLSSVT 201: WIDLGSNQLK GRGIVDFSIF LHLKSLCSLD LSYLNTRSMV DLSFFSHLMS LDELDLSGIN LKISSTLSFP SATGTLILAS CNIVEFPKFL ENQTSLFYLD 301: ISANHIEGQV PEWLWRLPTL SFVNIAQNSF SGELPMLPNS IYSFIASDNQ FSGEIPRTVC ELVSLNTLVL SNNKFSGSIP RCFENFKTIS ILHLRNNSLS 401: GVFPKEIISE TLTSLDVGHN WLSGQLPKSL IKCTDLEFLN VEDNRINDKF PFWLRSLSNL QILVLRSNEF YGPIFSLEDS LSFPKLRIFD ISENHFTGVL 501: PSDYFAGWSA MSSVVDIFDT TPQVHILGVF QGYYHNSVVL TNKGLNMELV GSGFTIYKTI DVSGNRLEGD IPESIGILKE LIVLNMSNNA FTGHIPPSLS 601: NLSNLQSLDL SQNRLSGSIP PELGKLTFLE WMNFSYNRLE GPIPQATQIQ SQNSSSFAEN PGLCGAPFLN KCGGEEEEEE EATKQEEDED EEKEEKNQVF 701: SWIAAAIGYV PGVFCGLTIA HILTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)